CodonCode Aligner is a commercial application. This is a Java program that allows the reading of sequence traces from ABI or SCF files, the display of traces on white or black background and the display of Phred quality values as bars or numbers with one of three different color schemes. What is more, the application is FREE! The current version is 1.4. This is a multi-platform application and has lots of really advanced features like displaying quality scores, editing and saving edits, searching for patterns, printing in multiple formats and much more. The best feature is the application is totally FREE! The same people have other OSX applications that might be useful for scientists and are also free. The application has lots of features and is more than just a "chromatogram viewer". This application has been written to run natively on OSX and makes full use of the OSX interface. Viewers for Apple Macintosh Viewers for MS Windows Viewers for Linux We strongly recommend that customers make use of such applications, since they can be very useful when attempting to resolve ambiguities within sequences or when trouble-shooting problems. Below are a selection of freeware and shareware applications for both Macintosh and PC that are available for viewing and editing the chromatogram output from our DNA sequencers.
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